When the same MCP server name is defined in multiple configuration scopes (project, user, etc.) with different endpoints, a warning is now shown with specific remediation guidance.
Details
Warning: Server "X" is defined in multiple scopes with different endpoints
Suggestion: Keep the correct endpoint and remove the others: \claude mcp remove X -s SCOPE\``
Shows the [Conflicting scopes] label in /doctor diagnostics
Evidence
MCP conflict detection (search for "is defined in multiple scopes with different endpoints")
Strings lifted out of the shipped bundle, so the claim above can be checked against them.
How sure we are
One source agreesOne thing we can check says the same as this entry.
Anthropic's release notes agreeImproved /doctor to warn when an MCP server is defined in multiple config scopes with different endpoints