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Manage Claude Code plugins for your organization Claude Code CLI · in the page plugins/org …/settings.json`. The `extraKnownMarketplaces` entries apply only in a folder the contributor has trusted, and in an untrusted folder Claude Code ignores them without a message: * **Interactive sessio… Plugins overview Claude Code CLI · in the page plugins/overview …lugins and where to fetch each one. You can also load a plugin from a folder someone gives you, or [build your own](https://code.claude.com/docs/en/plugins/create.md). > [!NOTE] > > These cases are c… Publish and distribute a plugin Claude Code CLI · in the page plugins/publish …hare-a-plugin-without-a-marketplace) | The people you send the plugin folder or a `.zip` of it | The plugin's folder | None. They load the copy you sent | | [Your own marketplace](#publish-through-you… Troubleshoot plugins Claude Code CLI · in the page plugins/troubleshooting …efuses an address that git could read as naming a different server or folder than the one the address shows. The text after the address names what to change. Rewrite the address as the message says a… How Claude Code uses prompt caching Claude Code CLI · in the page prompt-caching …ns`. * In interactive sessions, when you add or remove a plugin in a [folder of plugins](https://code.claude.com/docs/en/plugins/create.md#load-a-directory-or-archive-for-one-session) you passed with… Prompt library Claude Code CLI · in the page prompt-library …es: ['docs', 'marketing', 'pm'], prompt: 'read the {examples} in {folder} to learn the structure and voice, then draft a new one for {topic}', slots: { examples: 'privacy impact assessme… Quickstart Claude Code CLI · in the page quickstart …e is the main entry point? ``` ```text wrap theme={null} explain the folder structure ``` You can also ask Claude about its own capabilities: ```text wrap theme={null} what can Claude Code do? ```… Continue local sessions from any device with Remote Control Claude Code CLI · in the page remote-control …If `claude remote-control` prints `Spawn mode: <mode> (saved for this folder; press w to change)` at startup, the server is starting in a spawn mode saved earlier for this project. The saved mode com… Choose a sandbox environment Claude Code CLI · in the page sandbox-environments …ng the session creates later, such as `git init`, `git clone`, or scaffolding. The README's `mandatoryDenySearchDepth` section describes the scan's exact semantics. * If `~/.srt-settings.json` doesn't… Configure the sandboxed Bash tool Claude Code CLI · in the page sandboxing …`, or `refs` entry in your working directory is deleted unless it's a folder with contents. Newer means the entry wasn't there when the sandbox last built its configuration: at session start, or after… Run prompts on a schedule Claude Code CLI · in the page scheduled-tasks …instead of scheduling the task. A saved task runs only in the project folder where you created it. If you copy the file into another folder, such as a new worktree, sessions there list the copied task… Security Claude Code CLI · in the page security …Claude Code asks you before its file tools read or write outside the folder where it was started and its subfolders. The boundary is a permission prompt, so a Bash command you approve can still write… Customize sessions in self-hosted environments Claude Code CLI · in the page self-hosted-environments-configuration …H` | Absolute path where the working tree must be left. See [Checkout folder names](#checkout-folder-names). | | `CLAUDE_RUNNER_SESSION_ID` | Session ID in the tagged `session_...` form, for logging a… Claude Code settings Claude Code CLI · in the page settings …rust rule as hooks](/docs/en/permissions#what-runs-before-you-trust-a-folder), since a cloned repository can supply this file… Example settings files Claude Code CLI · in the page settings-example …KnownMarketplaces` entries take effect after each person [trusts this folder itself](https://code.claude.com/docs/en/permissions.md#project-allow-rules-and-workspace-trust), not only a parent folder;… All settings Claude Code CLI · in the page settings-reference …s/en/permissions.md#project-allow-rules-and-workspace-trust) for that folder. #### Permission rule syntax Permission rules follow the format `Tool` or `Tool(specifier)`. Claude Code evaluates `deny`… Extend Claude with skills Claude Code CLI · in the page skills …directory** Create a directory for the skill in your personal skills folder. Personal skills are available across all your projects. ```bash theme={null} mkdir -p ~/.claude/skills/summarize-changes… Customize your status line Claude Code CLI · in the page statusline …cut -d. -f1) # Output the status line - ${DIR##*/} extracts just the folder name echo "[$MODEL] 📁 ${DIR##*/} | ${PCT}% context" ``` **2. Make it executable** Mark the script as executable so your s… Create custom subagents Claude Code CLI · in the page sub-agents …-add-dir` or `/add-dir`, Claude Code also loads its `.claude/agents/` folder, alongside your project subagents. See [Additional directories](https://code.claude.com/docs/en/permissions.md#additional-d… Configure your terminal for Claude Code Claude Code CLI · in the page terminal-config …ly to a running session without a restart. If the `~/.claude/themes/` folder itself didn't exist when Claude Code started, restart once after creating your first theme file. After that, changes apply… Troubleshoot installation and login Claude Code CLI · in the page troubleshoot-install …. because it is being used by another process` | [Clear the downloads folder and retry](#the-process-cannot-access-the-file-during-windows-install) | | `Error loading shared library` | [Wrong binary v… Troubleshooting Claude Code CLI · in the page troubleshooting …u-matches-what-you-type); type it in full. On Linux without a Desktop folder, the files are written to your home directory. > [!WARNING] > > The `.heapsnapshot` file contains every string in the proc… Find bugs with ultrareview Claude Code CLI · in the page ultrareview …If the run exits with `Error: Workspace not trusted`, see [Trust the folder before the review runs](#trust-the-folder-before-the-review-runs). ```bash theme={null} claude ultrareview claude ultrarev… Use Claude Code in VS Code Claude Code CLI · in the page vs-code …on, you can also browse the memories Claude has saved and reveal the folders that store them in your file manager. Requires Claude Code v2.1.274 or later. Click a saved memory to read it in the… Orchestrate subagents at scale with dynamic workflows Claude Code CLI · in the page workflows …ard. If you already have an orchestrator built another way, such as a folder of subagent prompts or a skill that fans work out, you can point Claude at it and ask for a workflow that does the same thi… Run parallel sessions with worktrees Claude Code CLI · in the page worktrees …On Windows, removing a worktree doesn't delete files outside it. If a folder inside the worktree is a link to somewhere else, such as an NTFS junction or a directory symlink, Claude Code deletes only… Build for Claude Claude Documentation · in the page build/overview …gin](https://claude.com/docs/plugins/build.md) > > Lay out the plugin folder and manifest, write the skills, reference your MCP server, and test the plugin in Claude. > [card] [Write skills](https://… Admin controls Claude Documentation · in the page claude-science/admin-controls …s, host them in a GitHub repository. Put one `skills/<name>/SKILL.md` folder per skill in the repository and share the link. Members import them in the Claude Science app under **Settings** > **Skills… Artifacts in Claude Science Claude Documentation · in the page claude-science/artifacts …other output. Artifacts are stored on your computer in the app's data folder and persist until you delete them. Other files Claude writes during a session are temporary and are cleared a few hours aft… Auto mode Claude Documentation · in the page claude-science/auto-mode …: * Network access * Access to files outside the session's workspace folder * Remote compute * Claude Science's package and environment tools * Any tool you set to **Ask each time** Claude Science changelog Claude Documentation · in the page claude-science/changelog …e Science removes old local artifact entries for credential files and folders the sandbox hides, such as `.env` files and SSH keys. The files themselves aren't touched. Comments on those entries are d… Command line settings Claude Documentation · in the page claude-science/command-line-settings …y command. On Windows, `~` in the defaults below is your user profile folder, `%USERPROFILE%`. | Flag | Default | What it does | | - | - | - | | `--data-dir` `<dir>` | `~/.claude-science` | The data… Compute providers Claude Documentation · in the page claude-science/compute-providers …cker for the whole computer. If Docker is installed only in your home folder, ask Claude to call it by its full path in the endpoint's start and stop scripts. Configuration file reference Claude Documentation · in the page claude-science/configuration-file-reference …nal settings from a TOML file named `config.toml` in its default data folder, which is `~/.claude-science/config.toml` on macOS and Linux and `%USERPROFILE%\.claude-science\config.toml` on Windows. Ev… Connectors and skills Claude Documentation · in the page claude-science/connectors-and-skills …Human Protein Atlas, STRING | | Structures & Interactions | PDB, AlphaFold, EMDB, Complex Portal, IntAct | | RNA | Rfam | | Omics Archives | GEO, ArrayExpress, PRIDE, MGnify, MetaboLights | | Cancer M… Core concepts Claude Documentation · in the page claude-science/core-concepts …custom instructions for Claude to read at the start of every session. Folder permissions you grant persist across sessions within a project. A session is one conversation thread. Each session has its… Use Claude Science on a corporate network Claude Documentation · in the page claude-science/corporate-networks …as-a-file). Environments a member registers from an existing project folder install their packages inside the analysis sandbox during a session, where the credential is hidden by design, so those env… Get started Claude Documentation · in the page claude-science/get-started …ells can run git and Command Prompt scripts and PowerShell can change folders, **Yes** lets Windows ask for approval (an administrator's password if you aren't one) and **No** leaves those features of… Glossary Claude Documentation · in the page claude-science/glossary …r Settings > Connectors. **Data directory**: the `~/.claude-science` folder on your computer holding the database, artifacts, session workspaces, and logs. **[Environment](https://claude.com/docs/cl… How Claude Science works with your data Claude Documentation · in the page claude-science/how-claude-science-works-with-your-data …acts, saved memory, most settings, and stored credentials, in a local folder Anthropic doesn't host or sync (see [Manage Claude Science on devices](https://claude.com/docs/claude-science/manage-on-dev… Claude Science in its own window on macOS Claude Documentation · in the page claude-science/mac-app-window …er yours has switched, open Claude Science from your **Applications** folder after the update. If it still opens in a browser tab, it hasn't switched, and you keep using it as before. > [!NOTE] > > T… Manage Claude Science on devices Claude Documentation · in the page claude-science/manage-on-devices …ber's computer: Configuration: config.toml in the app's default data folder (`~/.claude-science/config.toml` on macOS and Linux, `%USERPROFILE%\.claude-science\config.toml` on Windows) holds all app… Use Claude Science on more than one computer Claude Documentation · in the page claude-science/multiple-computers …uter, Claude Science also keeps the work from each sign-in in its own folder. Signing in to a different organization or personal account starts fresh too, and you can access the earlier work (see [Acc… Network requirements Claude Documentation · in the page claude-science/network-requirements …prot.org`, `string-db.org`, `*.string-db.org`, `*.ebi.ac.uk`, `search.foldseek.com`, `rcsb.org`, `*.rcsb.org`, `*.proteinatlas.org` | | Literature and citations | `api.semanticscholar.org`, `api.biorx… Claude Science Claude Documentation · in the page claude-science/overview …aude writes and runs Python, R, or shell code in a sandbox, reads the folders you grant it, pulls data from scientific databases through connectors, and saves results as versioned artifacts with a ful… Run on a remote Linux server Claude Documentation · in the page claude-science/run-on-remote-linux-server …er puts the `claude-science` command in `~/.local/bin`, or in another folder you own if you export `CLAUDE_SCIENCE_INSTALL_DIR` with that folder's path before you run it. If you run Claude Science on… Tools and environments Claude Documentation · in the page claude-science/tools-and-environments …esn't install a package from a git repository, a web address, a local folder, or a local file. If the package, or a package it depends on, has no wheel for your computer and Python version, the instal… Troubleshoot Claude Science Claude Documentation · in the page claude-science/troubleshooting …iles, and a push from the sandbox may not upload them * **On Linux**: folders such as `.devcontainer` look empty in the sandbox, so git shows their files as deleted. Don't commit those deletions. For… Update Claude Science Claude Documentation · in the page claude-science/update-claude-science …fails. Your projects, conversations, and artifacts stay in your data folder. Updating stops running sessions, so afterward select **Resume** in any session that shows it above the message box. ## Up… Give Claude access to your tools Claude Documentation · in the page claude-tag/admins/add-connections …te a virtual user like `[email protected]` and share the folders and calendars it needs. If using a GCP service-account key with domain-wide delegation, restrict the delegation to that si…
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